PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114283.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30150.8 Da    PI: 7.921
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-18119173256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Le+ F+++++++ +++  LAkkl++t rqV vWFqNrRa+ k
  XP_009114283.1 119 RKKLRLSKDQSAFLEDTFKEHNTLNPKQKLALAKKLNMTARQVEVWFQNRRARTK 173
                     788899***********************************************98 PP
2HD-ZIP_I/II1201.2e-38119208191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LE++F+e+++L+p++K +la++L++++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  eLr +l
  XP_009114283.1 119 RKKLRLSKDQSAFLEDTFKEHNTLNPKQKLALAKKLNMTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELR-TL 208
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046188.0E-16285IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.3E-18102174IPR009057Homeodomain-like
SuperFamilySSF466891.33E-18104176IPR009057Homeodomain-like
PROSITE profilePS5007116.908115175IPR001356Homeobox domain
SMARTSM003897.0E-16117179IPR001356Homeobox domain
PfamPF000462.2E-15119173IPR001356Homeobox domain
CDDcd000865.57E-16119176No hitNo description
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
SMARTSM003401.1E-23175218IPR003106Leucine zipper, homeobox-associated
PfamPF021833.8E-8175208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMMGKEDLGL SLSLGFSQLS NPSSSISNNL HRFPWNQTFA STPDLGKIDV NSLPSKVDCE  60
EEAGVSSPNS TISSTISGGK RSEREGISDH DEITPDRGYS RGTSDEEEDI SGGGGETSRK  120
KLRLSKDQSA FLEDTFKEHN TLNPKQKLAL AKKLNMTARQ VEVWFQNRRA RTKLKQTEVD  180
CEYLKRCVEK LTEENRRLQK EAMELRTLKL SPQFYGQMTP PTTLIMCPSC ERVAGPSSNH  240
HQTHRPVAIN PWVARAGQVA HGLDFEALRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123SRKKLRL
2167175RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.168160.0bud| flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114283.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553471e-170AC155347.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH093K03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114283.10.0PREDICTED: homeobox-leucine zipper protein HAT2-like
SwissprotP466011e-169HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A397XW830.0A0A397XW83_BRACM; Uncharacterized protein
TrEMBLM4DLV80.0M4DLV8_BRARP; Uncharacterized protein
STRINGBra017489.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-133Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]