PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114491.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 366aa    MW: 43589.2 Da    PI: 7.4122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM422.9e-13271518128
             NAM   8 hPtdeelvveyLkkkvegkk..leleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                     +P+de +v++yLk  ++++k     +++   +e+++y+++Pw+   ++ + ++++  F+kr++  + gk       sg W+   +dk ++++ +g
  XP_009114491.1  27 EPEDEIMVSYYLKMMINNRKswP--HHFlrDEEANVYNLNPWSSF-SAPN-SDHYSIFVKRRT-DSCGKTDGS--VSGCWRIMARDKLIKCEeTG 114
                     7****************999542..3441145669*******984.3322.234445555544.455655555..48************998678 PP

             NAM  98 elvglkktLvfy......kgrapkgektdWvmheyrl 128
                     +  g kk+L f       ++++++ e+  Wvm+eyrl
  XP_009114491.1 115 RILGFKKILKFCennkkrSKEQEEEEEIIWVMEEYRL 151
                     88**********66544334455556788******98 PP
2NAM38.73e-122063389128
             NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                     P  +e+++++Lk  v+ ++   ++++++ ++y v Pw +  p + + + +   yfF++r +++    r+    + g W+   +d+ ++sk++++ 
  XP_009114491.1 206 PPRDEIISYHLKMCVDVRNDWPSHFLPSEQVYGVAPWMIvdPDQSSVDLQeGPYFFVNRTESS---GRTDG-CDGGCWRIMRRDRVITSKRNKVL 296
                     7789***********9999666588**************43333333333156*****98865...46666.478******************** PP

             NAM 101 glkktLvfy..............kgrapkgektdWvmheyrl 128
                     g k+ + f               ++ + +  k +Wvm+eyrl
  XP_009114491.1 297 GFKRLFKFCvkgeaepvykfwadEKYKVNELKVTWVMDEYRL 338
                     *********9888888887777656777778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.88320167IPR003441NAC domain
PfamPF023651.2E-926151IPR003441NAC domain
SuperFamilySSF1019411.7E-1928165IPR003441NAC domain
PROSITE profilePS5100519.362198354IPR003441NAC domain
PfamPF023653.6E-8205338IPR003441NAC domain
SuperFamilySSF1019414.18E-20206352IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEDQSIISQE DMGDDYSILS QEENQIEPED EIMVSYYLKM MINNRKSWPH HFLRDEEANV  60
YNLNPWSSFS APNSDHYSIF VKRRTDSCGK TDGSVSGCWR IMARDKLIKC EETGRILGFK  120
KILKFCENNK KRSKEQEEEE EIIWVMEEYR LVDKWKQDQV ICTIRELLQH EITTLLAKHL  180
SFLPKWIRPF SRKHLMPMWD LCVPDPPRDE IISYHLKMCV DVRNDWPSHF LPSEQVYGVA  240
PWMIVDPDQS SVDLQEGPYF FVNRTESSGR TDGCDGGCWR IMRRDRVITS KRNKVLGFKR  300
LFKFCVKGEA EPVYKFWADE KYKVNELKVT WVMDEYRLVK KKEQGKVICR IRLLFPLPLT  360
CHLQRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114491.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114491.10.0PREDICTED: uncharacterized protein LOC103839754
TrEMBLM4ELA30.0M4ELA3_BRARP; Uncharacterized protein
STRINGBra029571.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.12e-68NAC domain containing protein 23