PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114562.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 167aa MW: 19457.4 Da PI: 10.6955

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	64.1	2.5e-20	15	59	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 prlrW+++LH+ Fv +v+qLGG+ kAtPk+i+++m+vk+Ltl+h+ XP_009114562.1 15 PRLRWASDLHHYFVYVVNQLGGERKATPKKIVQAMGVKSLTLSHM 59 8*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-18	11	59	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-6	13	58	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-13	15	58	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MENPIVRFYT KSKMPRLRWA SDLHHYFVYV VNQLGGERKA TPKKIVQAMG VKSLTLSHMY 60 RNKKRRDSVQ AERRMRQEMR WRQSQEHLQI YERLRDATEF MQNQRRLSDN KEKTIAFLKP 120 SNKTMEVGHA DDGVVAAGYG ANVRLDSTGV LKGEEKLSLG LTLGLNY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114562.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114562.1	1e-123	PREDICTED: putative Myb family transcription factor At1g14600 isoform X3
TrEMBL	A0A078FQB9	1e-118	A0A078FQB9_BRANA; BnaA09g20380D protein
TrEMBL	A0A3P5YGK1	1e-118	A0A3P5YGK1_BRACM; Uncharacterized protein
STRING	Bra029503.1-P	1e-117	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	2e-30	G2-like family protein