PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114695.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 491aa MW: 54217.7 Da PI: 5.5357

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	310.3	4.3e-95	126	490	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +e L++++++v+s++l+ aq +L+rl+++ +sp+g+p+ R+a+yf+eAL + l++ ++ + + ts+++ +e++ a k fs +sPi+ fsh XP_009114695.1 126 IEDLIRVVDCVDSDELQHAQVILSRLNQRlRSPAGRPLLRAAFYFKEALGSLLSG-----SNRNQNRLTSWTEIVERIRAIKEFSGISPIPLFSH 215 689***********************99*********************.....7788899999999****************** PP GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 +taNqaIl++++++ Hi+Df+i+ G+Q+++L++++a++++ + lR+T+v+++e s+ e++ ++e+L +fA+ l+++f+++++++++++ XP_009114695.1 216 FTANQAILDSLHQSssPFAHIVDFEIGFGGQYASLMREIAEKSSATGgFLRVTAVVPEE--SAVETRLVKENLVQFAADLKIRFQIDFVLMRTFK 308 *********966678********************66655*****66..99**************************** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres 279 +l+++++r+ +gE ++V ++ ++r l + ++ +++ ++++sP+vvv+v++e +++sF ++f++ +e+y+++++sl+a +p+ + XP_009114695.1 309 MLSFKAIRFVEGERTVVLISPVIFRRL-------NGISGFVNDLRRVSPNVVVFVDSEgwNGIsGAGSFQREFVSGFEFYTMVLESLDAAAPNGD 396 **********************9.......33567***************642235889************************ PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +E ++l+++i +v ++ + + + ++Wre++ +aG++ vpls+++ qa++l++k +++g++v +++g+lvl+W++rpLv++SaWr XP_009114695.1 397 LVKKIIEGFVLRPKIAAAVEAAAVN-KRQGGGEMTWREAFCAAGMRMVPLSQFVDFQAECLVEKAQVRGFHVAKRQGELVLCWHGRPLVATSAWR 490 *****************9999.55556689**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.686	99	470	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-92	126	490	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MRVPASSDSN SGGKNLVVYD EPTSVLGLRR SPTPTTVEEK PLVSAASGGD NQFPSDDHAM 60 RSMDWDSIMR ELELDDDSTP NLKPNFPPPA HFAVVDPPLP GFPDQLNPAE YGYDNNNEGG 120 GGFDIIEDLI RVVDCVDSDE LQHAQVILSR LNQRLRSPAG RPLLRAAFYF KEALGSLLSG 180 SNRNQNRLTS WTEIVERIRA IKEFSGISPI PLFSHFTANQ AILDSLHQSS SPFAHIVDFE 240 IGFGGQYASL MREIAEKSSA TGGFLRVTAV VPEESAVETR LVKENLVQFA ADLKIRFQID 300 FVLMRTFKML SFKAIRFVEG ERTVVLISPV IFRRLNGISG FVNDLRRVSP NVVVFVDSEG 360 WNGISGAGSF QREFVSGFEF YTMVLESLDA AAPNGDLVKK IIEGFVLRPK IAAAVEAAAV 420 NKRQGGGEMT WREAFCAAGM RMVPLSQFVD FQAECLVEKA QVRGFHVAKR QGELVLCWHG 480 RPLVATSAWR F

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MRVPASSDSN SGGKNLVVYD EPTSVLGLRR SPTPTTVEEK PLVSAASGGD NQFPSDDHAM  60
RSMDWDSIMR ELELDDDSTP NLKPNFPPPA HFAVVDPPLP GFPDQLNPAE YGYDNNNEGG  120
GGFDIIEDLI RVVDCVDSDE LQHAQVILSR LNQRLRSPAG RPLLRAAFYF KEALGSLLSG  180
SNRNQNRLTS WTEIVERIRA IKEFSGISPI PLFSHFTANQ AILDSLHQSS SPFAHIVDFE  240
IGFGGQYASL MREIAEKSSA TGGFLRVTAV VPEESAVETR LVKENLVQFA ADLKIRFQID  300
FVLMRTFKML SFKAIRFVEG ERTVVLISPV IFRRLNGISG FVNDLRRVSP NVVVFVDSEG  360
WNGISGAGSF QREFVSGFEF YTMVLESLDA AAPNGDLVKK IIEGFVLRPK IAAAVEAAAV  420
NKRQGGGEMT WREAFCAAGM RMVPLSQFVD FQAECLVEKA QVRGFHVAKR QGELVLCWHG  480
RPLVATSAWR F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-22	131	489	25	378	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114695.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114695.1	0.0	PREDICTED: scarecrow-like protein 15
Swissprot	O23210	0.0	SCL15_ARATH; Scarecrow-like protein 15
TrEMBL	M4EH35	0.0	M4EH35_BRARP; Uncharacterized protein
STRING	Bra028100.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4291	28	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	0.0	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]