PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114752.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 556aa    MW: 61668.6 Da    PI: 4.3408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.26.9e-49131392128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelv++yLk+k+ +++l++ ++i  vd+yk++P++Lp +  +k+++++w+fF++r++ky++  r+ r t++gyWkatgkd+ ++ 
  XP_009114752.1  13 APGFRFHPTDEELVMYYLKRKICKTRLRV-SAIGVVDVYKLDPEELPgQsVLKSGDRQWFFFTPRNRKYPNAARSGRCTATGYWKATGKDRVIVY 106
                     69***************************.88**************96447788999*************************************9 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vglkktLvfy+grap+ge+tdWvmhey++
  XP_009114752.1 107 -DSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139
                     .999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.45512162IPR003441NAC domain
SuperFamilySSF1019412.09E-5513162IPR003441NAC domain
PfamPF023656.6E-2614138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MADSWLKGGK LSAPGFRFHP TDEELVMYYL KRKICKTRLR VSAIGVVDVY KLDPEELPGQ  60
SVLKSGDRQW FFFTPRNRKY PNAARSGRCT ATGYWKATGK DRVIVYDSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EDELGRCNTA KEYYALYKLF KKSGAGPKNG EDYGAPFQEE  180
EWVDDVNEVG DSNIPVNEES VTRRVDNATL FNPVNVQLDD VEEILNGIPY APGVPQTCIS  240
GLASIIPQVN SQEEELPSTL VNNSSGDFLP NVQPYNMPST FESTEATSVP NDSGMGPFVF  300
EQEDYIEMDD LLTSELGASS TEKPEQLLDP GEFREFNEFD QLFHDVSMFL DMDPILQGTS  360
ADPSSLSNFA NTSDQEDQSL YQQFQDQTPE NKLNNIMDPN PNLSQFTDNL WFQDDYQAVL  420
FDQPHSIISG AFASPSSGVD VMPGSTNLTT SVTAQDQEGE NGGGGTSPFS SALCAFMDSI  480
PSTPASACEG PINRTFVRMS SFSRMRFGGT PATTTFVAKK RSRNRGFLVL SIVGALCAIF  540
WVFIATVRAS GRPVFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-451413917140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519524KRSRNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.136950.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114752.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114752.10.0PREDICTED: NAC domain-containing protein 17-like isoform X2
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLM4EGX40.0M4EGX4_BRARP; Uncharacterized protein
STRINGBra028039.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]