PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114893.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 361aa    MW: 38635.7 Da    PI: 7.7513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-0982105125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +kt+lC+ f++ GtC+y  +C+FaH
  XP_009114893.1  82 FKTKLCCKFRA-GTCPYVTNCNFAH 105
                     69*********.************* PP
2zf-CCCH42.79.4e-14235260126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_009114893.1 235 WKTRICNKWEITGYCPFGAKCHFAHG 260
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-1379114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-779112IPR000571Zinc finger, CCCH-type
SMARTSM003560.003981107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67181108IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-782105IPR000571Zinc finger, CCCH-type
SMARTSM003560.6159186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6159186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887159187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7160186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-17230264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-10231265IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178234262IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-11235260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSHRRDSSGD VVHVIPTNNP PPENWFPNLG DTSVWATEDD YNRVWAVNPD GDNGPPNKKT  60
RGSPSSASAA SNRTKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHTVEEL RRPPPNWQEI  120
VAAHEEERSG SGTPATVEPR EEYQIPSLVS STDESGGRSF KGRHCKKFYT EEGCPYGETC  180
TFLHDEASRN RESVAISLGP GGYGGGGSGG GNSNVVVLGG GGSGSGVDIL KPSNWKTRIC  240
NKWEITGYCP FGAKCHFAHG AAELHRFGGG LVEGEGKDGG VSSNLDIKQT GPNPKGHSDT  300
TTPLLSPGVV PHNADAGYHS GVALQRASSA VTQKPGIRTH QKWKGPAKIS RIYGDWIDDI  360
E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.29801e-138flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114893.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892550.0AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114893.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
RefseqXP_013662298.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLM4E3A90.0M4E3A9_BRARP; Uncharacterized protein
STRINGBra023260.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein