PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114934.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 258aa    MW: 29411.6 Da    PI: 8.1466
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114934.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.15.6e-162358439
             TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                    +gC+Ck++kClkkYCeCf+a++ Cs++CkC +C+N 
  XP_009114934.1 23 RGCKCKRTKCLKKYCECFQANALCSDNCKCINCENV 58
                    79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163416.321160IPR005172CRC domain
SMARTSM011141.2E-152061IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-122357IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MICALYYIYS KAAADTKHGL LSRGCKCKRT KCLKKYCECF QANALCSDNC KCINCENVSA  60
LGATNNTPDS LICAPQSSLQ VYRRRRRYRE LLPEWNSCPA PLSSMPDNYV LDSLESPMYS  120
STKLPYKKKR SRLGCTTPKL VPDLGDLRSL LLAASESATA NAGLQDKNRI RIKPDDKELW  180
NESESGIVEE EDIQSCGRLI QLIDAQYNDE VDPQTKTSFP ERDAYMEQER AVLETFRDCL  240
HKYMKKIGFM KGTNYYHF
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114934.20.0PREDICTED: protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-89TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLM4DXB91e-167M4DXB9_BRARP; Uncharacterized protein
STRINGBra021165.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.12e-77Tesmin/TSO1-like CXC domain-containing protein