PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115015.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 133aa    MW: 15583.8 Da    PI: 6.7866
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.37.3e-121312151
                    HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                    +KKA EL vLCd+ + +iifs+++kly +ss
  XP_009115015.1  1 MKKARELFVLCDVPIGLIIFSQSDKLYSFSS 31
                    8****************************96 PP
2K-box31.29.5e-12601311382
           K-box  13 kaeslqqe.lakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                     ++ s+++e  + + +eienL+ ++  +  G +L+ L++ +L + + qLe sl++ R++K el+++  ++lq+
  XP_009115015.1  60 DHGSYCEEtKESMMREIENLKMNLQFYgGGHNLNLLTYDDLLRFQLQLECSLQNARARKFELMHQLHQTLQE 131
                     4445555515789********98554414689********************************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.582133IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-13148IPR002100Transcription factor, MADS-box
PfamPF003197.6E-10129IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.53962133IPR002487Transcription factor, K-box
PfamPF014863.6E-764132IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030308Biological Processnegative regulation of cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048530Biological Processfruit morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MKKARELFVL CDVPIGLIIF SQSDKLYSFS SQSTSMEKLI MRYQMAKEGH ATSVDSFHPD  60
HGSYCEETKE SMMREIENLK MNLQFYGGGH NLNLLTYDDL LRFQLQLECS LQNARARKFE  120
LMHQLHQTLQ ENR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in bud pedicels, petals, anthers, style, ovary, seeds and embryos. {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00172DAPTransfer from AT1G31140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115015.18e-96PREDICTED: MADS-box protein GGM13
SwissprotQ9SA072e-50AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A3P5YJ515e-81A0A3P5YJ51_BRACM; Uncharacterized protein
STRINGBo5g065750.13e-70(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.28e-53GORDITA
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]