PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009115137.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 183aa MW: 20782.3 Da PI: 9.2719

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009115137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.4	1.2e-33	100	156	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rakle+++k+ ksrkpylheSRh hA+rRpRg+gGrF XP_009115137.1 100 EEPVFVNAKQYHGILRRRQSRAKLESQNKV-VKSRKPYLHESRHLHAIRRPRGCGGRF 156 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.2E-38	98	159	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.642	99	159	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.8E-28	101	156	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-24	102	124	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	104	124	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-24	133	156	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MASSVHDLSD KIETHDKQEH KDSQFQIQPP IPPGRNSAVY SEQLPHSMAP GHYPYPDPYY 60 RSIFAPNPQA YPPRPYETGV HAHLMGVQQQ CVPLPSDAVE EPVFVNAKQY HGILRRRQSR 120 AKLESQNKVV KSRKPYLHES RHLHAIRRPR GCGGRFLNAK KEEEHHEGNH LEEKSMAASG 180 GTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	99	166	1	68	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009115137.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189342	4e-87	AC189342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042D24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115137.1	1e-134	PREDICTED: nuclear transcription factor Y subunit A-7
Refseq	XP_009115138.1	1e-134	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	8e-91	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	M4EUB3	1e-132	M4EUB3_BRARP; Uncharacterized protein
STRING	Bra032395.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	7e-84	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]