PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115226.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 185aa    MW: 21757.4 Da    PI: 8.2811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-101538427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C+f++rtG C yG++C+++H++
  XP_009115226.1 15 KDCQFYLRTGRCGYGENCCYNHPK 38
                    68********************96 PP
2zf-CCCH23.78.5e-084870427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C+ff+r G Ck G+ C F H++
  XP_009115226.1 48 PKCKFFLR-GKCKNGSHCDFDHSK 70
                    78******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2491139IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-51138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-51338IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-81538IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-51738IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7464471IPR000571Zinc finger, CCCH-type
SMARTSM003560.00174470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64669IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-54770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-45071IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMVESSEYPV RPGIKDCQFY LRTGRCGYGE NCCYNHPKEI PTGKINMPKC KFFLRGKCKN  60
GSHCDFDHSK EGDRAEHTRQ GQKRYRTEST SRSSPEKRKH RQGDIEKQST EAEDIPQGEK  120
LREMQENDND QQKLVEQRKR DIERQRREAR LSLEQIKPTV YFDEAIRIRE ILAEFGFIHT  180
EGDGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115226.11e-136PREDICTED: putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A3P5YJP41e-130A0A3P5YJP4_BRACM; Uncharacterized protein
STRINGBra032327.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.13e-24C3H family protein