PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115284.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20768.6 Da    PI: 8.7637
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.2e-152063649
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +  r +tfskR+ngi  K +ELS+LC+a+v  +i+s +gk +++
  XP_009115284.1 20 NEDRIITFSKRKNGIYTKLSELSILCGADVGFLIYSGSGKPFTF 63
                    567899**********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.85E-23781IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.175767IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-20766IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-15929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-181763IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGGKKTRGRQ KIDIKKVTKN EDRIITFSKR KNGIYTKLSE LSILCGADVG FLIYSGSGKP  60
FTFGSPSFDD VAQRFLHGNH HSGIINGEGN SSSSSLIVDA HKKVKMDEFC KNLNNLMEIK  120
TAAEEEKLKM AEPAYAPSLP VKSTDEEEKQ LLRRYEEYYE ELCEVAAAKI RGRYDVPASS  180
SFPQHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115284.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013658470.11e-119agamous-like MADS-box protein AGL29
TrEMBLM4EU651e-135M4EU65_BRARP; Uncharacterized protein
STRINGBra032347.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-43AGAMOUS-like 64