PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115286.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 227aa    MW: 26672 Da    PI: 8.0077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-072954227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ Cr ++ +G C +G++C F+H++
  XP_009115286.1 29 GQSSCRSYLHSGLCVRGSNCLFNHPR 54
                    5677********************96 PP
2zf-CCCH29.21.6e-095375427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    ++C+ff+r G+Ck G+ CkF H++
  XP_009115286.1 53 PRCKFFLR-GFCKDGSACKFLHSR 75
                    68******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.6292748IPR000571Zinc finger, CCCH-type
SMARTSM003560.0882754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1314976IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-75375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-65474IPR000571Zinc finger, CCCH-type
SMARTSM003561.25575IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-55576IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MATNLDRERS EPKTTSDERI PSDYPVRPGQ SSCRSYLHSG LCVRGSNCLF NHPRCKFFLR  60
GFCKDGSACK FLHSRDNEAP MRQALSSNEK NFHPKVMEKE NHKVDAHGQE YNLQVGRKRE  120
SIEWQTREAQ EMGRRKSKAF LEEQRVTVKE TETRDLILFF YCHCKVEKTT DKIDEKRQRD  180
VEKLEIEAEE ISEEQRLKVE KNGGRLVRDL SQVFEFESSN IFSQLLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115286.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509916.11e-168PREDICTED: putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A0D3CEJ66e-39A0A0D3CEJ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FI986e-39A0A3P6FI98_BRAOL; Uncharacterized protein
STRINGBo5g059850.11e-39(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1879646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-10zinc finger protein 1