PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115435.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 229aa    MW: 26420.4 Da    PI: 4.6207
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54e-1768121356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+ ql  Lee Fe+++ +  +++  LA+klgL+ +qV vWFqNrRa+ k
  XP_009115435.1  68 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFK 121
                     56799***********************************************98 PP
2HD-ZIP_I/II111.74.9e-3668158292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkr+l+  q+ lLEesFee+++Lep+rK  la++Lglqp qvavWFqnrRAR+kt+qlE d+++Lk++y +lk++++ L +++++L+++++
  XP_009115435.1  68 KKRKLTPIQLCLLEESFEEDKRLEPDRKLWLAEKLGLQPTQVAVWFQNRRARFKTRQLELDCDSLKASYAKLKTDRDILFRQNQALENKVA 158
                     9*************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1849125IPR009057Homeodomain-like
PROSITE profilePS5007116.29363123IPR001356Homeobox domain
SMARTSM003893.5E-1766127IPR001356Homeobox domain
PfamPF000461.8E-1468121IPR001356Homeobox domain
CDDcd000863.45E-1568124No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1770127IPR009057Homeodomain-like
PRINTSPR000315.6E-594103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000315.6E-5103119IPR000047Helix-turn-helix motif
PfamPF021833.6E-13124165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENSNIDSEV FSWFQNQNQN HCLKFHSSCF PPTSQSALYG SSSMSNTETN TVDEDDVCES  60
YKMRETTKKR KLTPIQLCLL EESFEEDKRL EPDRKLWLAE KLGLQPTQVA VWFQNRRARF  120
KTRQLELDCD SLKASYAKLK TDRDILFRQN QALENKVALL KEKLQFQEKL ETQSMEAEKL  180
GEEGSSVKSD NTQYTEEEEG LGSNQYSFPE LAALGFYYDP TMSASNLGL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0003483e-98AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence.
GenBankCP0026843e-98CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115435.11e-170PREDICTED: homeobox-leucine zipper protein ATHB-54
SwissprotP0CJ651e-132ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLA0A397XYR61e-168A0A397XYR6_BRACM; Uncharacterized protein
STRINGBo5g041500.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-124HD-ZIP family protein