PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009115716.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 222aa MW: 23903.5 Da PI: 8.594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009115716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.3e-38	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s+ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk+ k+s XP_009115716.1 30 QQEQLPCPRCNSSNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKSAKRS 90 68999***************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	4	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MMMSDSGEPR QIAMRPHGVI TGLPPTANEQ QEQLPCPRCN SSNTKFCYYN NYNFSQPRHF 60 CKSCRRYWTH GGTLRDIPVG GGTRKSAKRS RTCSSSSSGT RTTSVPLPAT PVLFPHSSTS 120 NGVSHTVTAP LENDGKGNAL SLSGNFTSLL NQNNAGSSFD DVSFALGRAV WPFPTVGDSA 180 TTNVPGVAVP YTWQFEGLES SNAGEYFAWP DLSITTPGNS LK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:8718629}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009115716.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189379	0.0	AC189379.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115716.1	1e-164	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	2e-99	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	M4F4S8	1e-163	M4F4S8_BRARP; Uncharacterized protein
STRING	Bra036082.1-P	1e-164	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	4e-91	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]