PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115871.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 420aa    MW: 48184.9 Da    PI: 4.7918
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.12.6e-25206264155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk....vkgLtlehvkSHLQkYRl 55 
                     kpr+ WtpeLH+ F +ave++GG e+A+Pk+il++m+     +gLt+++v+SHLQkYRl
  XP_009115871.1 206 KPRMTWTPELHQLFEKAVEKMGGVEQAVPKQILKCMQeekdAEGLTRNNVASHLQKYRL 264
                     79**********************************7333368***************8 PP
2Response_reg57.86.3e-20441481105
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +++vd +p  + l+++++++  y +v+ +++g ea++ l   ++++Dl++ D   p+++Gle+lk+i +e  +lp+++++ + +++++ e  k+G
  XP_009115871.1  44 IVLVDSDPESLCLMKNLMTQYSY-QVRDFKNGAEAIAFLmmSKHEIDLVIWDFHVPEINGLEALKTIGKEM-DLPVVIMSHEHKKKTVMESTKRG 136
                     689********************.*************99556666**********************6644.7********************** PP

                     ESEEEESS--HH CS
    Response_reg  94 akdflsKpfdpe 105
                        fl Kp+++e
  XP_009115871.1 137 SCNFLLKPVSKE 148
                     ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.8E-2641183No hitNo description
SuperFamilySSF521721.38E-2341165IPR011006CheY-like superfamily
SMARTSM004481.4E-1342153IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.44243158IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-1744148IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.31E-1546153No hitNo description
Gene3DG3DSA:1.10.10.603.5E-24203265IPR009057Homeodomain-like
PROSITE profilePS5129411.519203267IPR017930Myb domain
SuperFamilySSF466892.51E-14205265IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-21206265IPR006447Myb domain, plants
PfamPF002492.8E-9208263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSVSSNILKE NSRDLLREEE PGDDEVEFPI NDEDEDFSIT SIRIVLVDSD PESLCLMKNL  60
MTQYSYQVRD FKNGAEAIAF LMMSKHEIDL VIWDFHVPEI NGLEALKTIG KEMDLPVVIM  120
SHEHKKKTVM ESTKRGSCNF LLKPVSKEII AVLWQHVYRK RVSIYSVESN PEENVGLDQD  180
DIDLYQTNSN SGEQTSSYQK EGKNKKPRMT WTPELHQLFE KAVEKMGGVE QAVPKQILKC  240
MQEEKDAEGL TRNNVASHLQ KYRLNSGKKS SMIQETREDS EWRNAGPNTA LTASKPLPNS  300
IFGLHTRVPY FANDQDARNG PMQYPSTNYF TMDNGHFMTN SFANLPYTDS FHQQQQQQFQ  360
HQQYSNSSLQ LPSVITKQEF PYVSAALENP DLIANENSLY MDLGDYLQEG LSDFDKTNRY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in mature pistil tip. Also detected in the shoot apical meristem as well as vascular tissue and hydathodes of the leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553350.0AC155335.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115871.10.0PREDICTED: putative two-component response regulator ARR20 isoform X1
SwissprotQ9LZJ81e-125ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLM4FIU80.0M4FIU8_BRARP; Uncharacterized protein
STRINGBra041027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-98response regulator 20