PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115872.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 365aa    MW: 41856 Da    PI: 5.9058
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.42.1e-25151209155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk....vkgLtlehvkSHLQkYRl 55 
                     kpr+ WtpeLH+ F +ave++GG e+A+Pk+il++m+     +gLt+++v+SHLQkYRl
  XP_009115872.1 151 KPRMTWTPELHQLFEKAVEKMGGVEQAVPKQILKCMQeekdAEGLTRNNVASHLQKYRL 209
                     79**********************************7333368***************8 PP
2Response_reg43.91.3e-15169329105
                     ESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
    Response_reg  29 addgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                     +++g ea++ l   ++++Dl++ D   p+++Gle+lk+i +e  +lp+++++ + +++++ e  k+G   fl Kp+++e
  XP_009115872.1  16 FKNGAEAIAFLmmSKHEIDLVIWDFHVPEINGLEALKTIGKEM-DLPVVIMSHEHKKKTVMESTKRGSCNFLLKPVSKE 93 
                     68999999988546666**********************6644.7******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011022.4561103IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-121693IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.26E-111698No hitNo description
Gene3DG3DSA:3.40.50.23001.6E-1816129No hitNo description
SuperFamilySSF521722.13E-1617110IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.602.8E-24148210IPR009057Homeodomain-like
PROSITE profilePS5129411.519148212IPR017930Myb domain
SuperFamilySSF466891.97E-14150210IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-21151210IPR006447Myb domain, plants
PfamPF002492.3E-9153208IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPHEEPHDTV LLPRDFKNGA EAIAFLMMSK HEIDLVIWDF HVPEINGLEA LKTIGKEMDL  60
PVVIMSHEHK KKTVMESTKR GSCNFLLKPV SKEIIAVLWQ HVYRKRVSIY SVESNPEENV  120
GLDQDDIDLY QTNSNSGEQT SSYQKEGKNK KPRMTWTPEL HQLFEKAVEK MGGVEQAVPK  180
QILKCMQEEK DAEGLTRNNV ASHLQKYRLN SGKKSSMIQE TREDSEWRNA GPNTALTASK  240
PLPNSIFGLH TRVPYFANDQ DARNGPMQYP STNYFTMDNG HFMTNSFANL PYTDSFHQQQ  300
QQQFQHQQYS NSSLQLPSVI TKQEFPYVSA ALENPDLIAN ENSLYMDLGD YLQEGLSDFD  360
KTNRY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in mature pistil tip. Also detected in the shoot apical meristem as well as vascular tissue and hydathodes of the leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553350.0AC155335.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115871.10.0PREDICTED: putative two-component response regulator ARR20 isoform X1
SwissprotQ9LZJ82e-99ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLM4FIU80.0M4FIU8_BRARP; Uncharacterized protein
STRINGBra041027.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.13e-99response regulator 20