PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115943.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 122aa    MW: 13676.4 Da    PI: 6.2373
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-1754122473
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                     +++++++lk + l+lpk+ +++  ++k++ ++++l +++g+sW+ +l+++ ++g+y++t+GW +F+++n+
  XP_009115943.1  54 AEVTASNLKADKLYLPKRATSSTALNKQC-QEMILVNKEGNSWTANLRFSESGGMYYITRGWGKFCRDNK 122
                     67899999***************999877.5*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-1550122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-1651122No hitNo description
PROSITE profilePS5086312.29451122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-1451122IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-1654122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MVFHVTPFGP SCCEIQYTHP HIIKEEADAG DADDNEIRGT GAMSSFSFDY CFLAEVTASN  60
LKADKLYLPK RATSSTALNK QCQEMILVNK EGNSWTANLR FSESGGMYYI TRGWGKFCRD  120
NK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894647e-85AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115943.22e-87PREDICTED: B3 domain-containing protein REM7-like
TrEMBLM4DXM43e-87M4DXM4_BRARP; Uncharacterized protein
STRINGBra021270.1-P6e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-22B3 family protein