PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116013.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 245aa    MW: 29210.6 Da    PI: 6.7981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v++lG ++W++ ar  g++R++k+c++rw +yl
   XP_009116013.1 11 RGPWLEEEDERLVKFVTLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58
                     89********************************************97 PP
2Myb_DNA-binding48.71.7e-1564108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+ ++ ++++ +G++ W++Iar+++ gRt++++k++++++
   XP_009116013.1  64 RGPMSLEEETIIFQLHAFWGNK-WSKIARRLP-GRTDNEVKNYYRTH 108
                      899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.604662IPR017930Myb domain
SuperFamilySSF466894.79E-278105IPR009057Homeodomain-like
SMARTSM007171.1E-131060IPR001005SANT/Myb domain
PfamPF002491.6E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-191265IPR009057Homeodomain-like
CDDcd001671.38E-81358No hitNo description
SMARTSM007174.6E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129418.18463113IPR017930Myb domain
PfamPF002491.9E-1364108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2266113IPR009057Homeodomain-like
CDDcd001671.75E-866109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDYKKEENLR RGPWLEEEDE RLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP  60
SLKRGPMSLE EETIIFQLHA FWGNKWSKIA RRLPGRTDNE VKNYYRTHFR KKLEGQNYDK  120
IIDWSRNTGE DLLRKYKETE ITWTRTTTQE HGFDKTVKES KQMNMESDKE TCGGIFERES  180
FGVMKSPYEN RISDWISEIS TDQSDANVLE ERTSSSSENN ININVGSWWF QETRDIEEFS  240
CSLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2791132105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-27911356159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-27911356159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-27911325128MYB TRANSFORMING PROTEIN
1mse_C3e-2791132105C-Myb DNA-Binding Domain
1msf_C3e-2791132105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116013.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892690.0AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
GenBankAC1895020.0AC189502.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087M20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116013.11e-180PREDICTED: transcription factor MYB24-like
RefseqXP_013675567.11e-180transcription factor MYB27
SwissprotQ9SCP11e-135MYB27_ARATH; Transcription factor MYB27
TrEMBLM4CRY51e-179M4CRY5_BRARP; Uncharacterized protein
STRINGBra006977.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-123myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]