PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116027.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 180aa    MW: 19583.8 Da    PI: 6.5359
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.71.5e-5734131198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimk+ lPan+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa++tlGfe+yveplk yl++yre+eg
  XP_009116027.1  34 VREQDRFLPIANISRIMKRGLPANGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKFYLTRYREMEG 128
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_009116027.1 129 DNK 131
                     975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-5530146IPR009072Histone-fold
SuperFamilySSF471134.66E-4137155IPR009072Histone-fold
PfamPF008086.5E-2840104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-216886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-2187105No hitNo description
PRINTSPR006154.5E-21106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MADSQAKSSG MSPGVGGGGS HESGGDQSPR SMNVREQDRF LPIANISRIM KRGLPANGKI  60
AKDAKETMQE CVSEFISFVT SEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVEPLKFYL  120
TRYREMEGDN KGSGKGGESS AKRDGQPGQF LQQGQQGSFS QGPYGNAQGS HMMVQMPNAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4834125192Transcription factor HapC (Eurofung)
4g92_B2e-4834125192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.59050.0bud| flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-134AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116027.11e-132PREDICTED: nuclear transcription factor Y subunit B-10
SwissprotQ67XJ28e-98NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A397Y0301e-130A0A397Y030_BRACM; Uncharacterized protein
STRINGXP_006403703.11e-100(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-75nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]