PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116115.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 110aa    MW: 12360.9 Da    PI: 8.0907
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.51.7e-152361241
             TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                    ++k+C+C++skClk+YC+Cfa+g+ C++ C C dC+N+++
  XP_009116115.1 23 KQKRCRCRQSKCLKLYCDCFASGVLCND-CDCADCHNNTD 61
                    89**************************.********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-152262IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163415.33323110IPR005172CRC domain
PfamPF036383.2E-122459IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MTSRGEREGN NNTDHQDGVT GRKQKRCRCR QSKCLKLYCD CFASGVLCND CDCADCHNNT  60
DNSYLREAAV LNLLDRNPNA FNGKPPSFSI DKQVCLKQNI VAFTHKTISE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116115.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114934.25e-62PREDICTED: protein tesmin/TSO1-like CXC 8
SwissprotQ700D02e-29TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLM4DXB98e-61M4DXB9_BRARP; Uncharacterized protein
STRINGBra021165.1-P1e-61(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.13e-09Tesmin/TSO1-like CXC domain-containing protein