PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009116129.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 194aa MW: 21568.3 Da PI: 10.4191

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009116129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	166	2.1e-51	43	184	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp+++ r+ + +++ss+++++ + ++s+++++ +++++s++ XP_009116129.1 43 EEKVCKDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSHHRSVSR-SSSSSSDRNKKLKLDSSDKPKSV----------LIVPTTTSRQ 126 6789**************************************9998433.33333333333444444444433..........3333334444 PP DUF702 99 ele.tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 e++ +++lP +++++avf+++rv++v+ +++e++Yq+ v+i+GhvfkG+L+++G+++ XP_009116129.1 127 ETSfKERLPGKIEAPAVFKRTRVTAVSSnEQAEIGYQANVTISGHVFKGFLHYYGVDH 184 4440345***************875899**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-47	45	183	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-26	46	87	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.9E-27	133	182	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MLGLRNTLFL NQPPSQITQP SPSPVNFTAA DVNNKSSRNS NVEEKVCKDC GNRAKKECLF 60 ERCRTCCKSR GYNCATHVKS TWVPSSHHRS VSRSSSSSSD RNKKLKLDSS DKPKSVLIVP 120 TTTSRQETSF KERLPGKIEA PAVFKRTRVT AVSSNEQAEI GYQANVTISG HVFKGFLHYY 180 GVDHNKSFPS LSNK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009116129.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF446889	1e-65	AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBank	AY052675	1e-65	AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116129.2	1e-141	PREDICTED: protein SHI RELATED SEQUENCE 6-like
Swissprot	Q9M2U4	4e-93	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	M4CS80	1e-140	M4CS80_BRARP; Uncharacterized protein
STRING	Bra007072.1-P	1e-140	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	7e-77	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]