PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116358.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 359aa    MW: 41805.9 Da    PI: 5.1781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.83.8e-141942961113
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp G++F+Ptd e+   +Lk+k+ g+++e+  + +e   di+++ P+dLp   + ee++wy+++ +++    g++  r    + W    +d++v+
  XP_009116358.1 194 LPEGLHFRPTDVEMA-IFLKQKALGQPIEACII-PEErhDIFSIPPRDLPG--YPEETHWYYYCWKST----GQQDPR----SLWTRFREDTAVF 276
                     699**********99.9************9655.44437***********4..34789******9854....677777....48*********** PP

             NAM  94 skkgelvglkktLvfykgra 113
                     +++++ v +k+ +++ + ++
  XP_009116358.1 277 DEEENCVAVKRRFTLVEREE 296
                     *99999******99995333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011911.1E-543112IPR005491ENT domain
PROSITE profilePS5113810.35643129IPR005491ENT domain
SuperFamilySSF1586391.7E-644103IPR005491ENT domain
PfamPF037354.7E-1045101IPR005491ENT domain
SMARTSM011910.46139198IPR005491ENT domain
PfamPF037352.0E-5142176IPR005491ENT domain
SuperFamilySSF1019411.14E-17192338IPR003441NAC domain
PROSITE profilePS5100517.976194338IPR003441NAC domain
PfamPF023652.7E-4195318IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MADKKDLDPN HPADGTFLCP VKKRAIAERS LTGFGRAHEP EFKKQRLEQL QRKAYHSVLL  60
ASKSESSGTS HKSHIIQKLM NEWNIDQETH ISVAHKIDNS DKNATWMIPN SLPNPESLVG  120
KRVHARSPDD EDDDSPTNKK IKLHKQAYDH VLHAFNAESP ALSHSRTLIM QHLLDECNNK  180
AHINKIVEPR SRLLPEGLHF RPTDVEMAIF LKQKALGQPI EACIIPEERH DIFSIPPRDL  240
PGYPEETHWY YYCWKSTGQQ DPRSLWTRFR EDTAVFDEEE NCVAVKRRFT LVEREEECND  300
VFLPDEEEPP VEEWFIKEIS LPPSVADSEF VLCHVVLKKR EKKKEEEEEY YDEEEEEED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894560.0AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116358.10.0PREDICTED: uncharacterized protein LOC103841560 isoform X2
TrEMBLA0A3P5Y5V90.0A0A3P5Y5V9_BRACM; Uncharacterized protein
STRINGBra007254.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-45NAC family protein