PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009116383.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 282aa MW: 31259.2 Da PI: 9.816

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009116383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.8	1.5e-15	211	253	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ XP_009116383.1 211 RKQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRR 253 689**************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.8E-14	204	254	No hit	No description
SMART	SM00338	3.3E-12	207	280	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	209	254	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.13E-22	211	265	No hit	No description
SuperFamily	SSF57959	2.06E-10	211	256	No hit	No description
Pfam	PF00170	1.9E-12	211	254	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	214	229	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDSQREARSQ QSLNRQGSLY SLTLDEVQTH LGSSGKALGS MNLDELLKSV CSVDGNQPSS 60 LAAHEGLSRQ GSLTLPRDLS KKTVEEVWKD IQQDKNGGGS GHERRDKQPT LGEMTLEDLL 120 LKAGVVTETV PGSNHGNGSA GMEQNIPQVA PWVQYHQLPS MPQPQSFMPY PVADMQAMVS 180 QSSLMGGLSD TQTPGRKRVA SGEVVEKTVE RKQKRMIKNR ESAARSRARK QAYTHELEIK 240 VSRLEEENER LRRQKEVEKI LPSAPPPLDP KRQLRRTSSA PF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.8523	0.0	flower\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009116383.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX122898	0.0	JX122898.1 Brassica napus ABA-responsive element binding factor AREB3.1 (AREB3.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116383.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-174	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	M4CST2	0.0	M4CST2_BRARP; Uncharacterized protein
STRING	Bra007274.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-167	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]