PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009116607.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 265aa MW: 30505.1 Da PI: 5.4232

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009116607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.5	2.6e-29	100	187	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH+l+p XP_009116607.1 100 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNHPLMP 187 9****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-27	100	187	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MNVDFRIDNG DADGMMMTIS VENHNEMGET SGQAMIEQDD ENHNEIGESS NQEMPLEQDE 60 KVDPDSIPLA VSDMAEEEVQ GGDEPYVGQE FESEAAAHGF YNAYATKVGF VIRVSKLSRS 120 RHDGSPIGRQ LVCNKEGYRL PSKRDKVIRQ RAETRVGCRA MILIRKENSG KWVITKFAKE 180 HNHPLMPGRV RRGCIYDQYP NEHDKIQELM QQLAAEKKRA ATYKRHLEML FEQIEQHNES 240 LTKRIQHIVD NVRDLEQRDH QQNQV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.29001	2e-83	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009116607.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058089	0.0	AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBank	AY143081	0.0	AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116607.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBL	A0A3P5YSU9	0.0	A0A3P5YSU9_BRACM; Uncharacterized protein (Fragment)
STRING	Bo8g093280.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-165	FAR1 family protein