PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116608.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 263aa    MW: 30291.8 Da    PI: 5.4232
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.52.6e-2998185291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH+l+p
  XP_009116608.1  98 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNHPLMP 185
                     9******************************************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-2798185IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDFRIDNGDA DGMMMTISVE NHNEMGETSG QAMIEQDDEN HNEIGESSNQ EMPLEQDEKV  60
DPDSIPLAVS DMAEEEVQGG DEPYVGQEFE SEAAAHGFYN AYATKVGFVI RVSKLSRSRH  120
DGSPIGRQLV CNKEGYRLPS KRDKVIRQRA ETRVGCRAMI LIRKENSGKW VITKFAKEHN  180
HPLMPGRVRR GCIYDQYPNE HDKIQELMQQ LAAEKKRAAT YKRHLEMLFE QIEQHNESLT  240
KRIQHIVDNV RDLEQRDHQQ NQV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.290012e-83leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116608.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLA0A3P5YSU90.0A0A3P5YSU9_BRACM; Uncharacterized protein (Fragment)
STRINGBo8g093280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-165FAR1 family protein