PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116609.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 251aa    MW: 28984.4 Da    PI: 5.9681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.72.3e-2986173291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH+l+p
  XP_009116609.1  86 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNHPLMP 173
                     9******************************************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-2786173IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMMTISVENH NEMGETSGQA MIEQDDENHN EIGESSNQEM PLEQDEKVDP DSIPLAVSDM  60
AEEEVQGGDE PYVGQEFESE AAAHGFYNAY ATKVGFVIRV SKLSRSRHDG SPIGRQLVCN  120
KEGYRLPSKR DKVIRQRAET RVGCRAMILI RKENSGKWVI TKFAKEHNHP LMPGRVRRGC  180
IYDQYPNEHD KIQELMQQLA AEKKRAATYK RHLEMLFEQI EQHNESLTKR IQHIVDNVRD  240
LEQRDHQQNQ V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.290012e-83leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116607.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_009116608.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLA0A3P5YSU90.0A0A3P5YSU9_BRACM; Uncharacterized protein (Fragment)
STRINGBo8g093280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-166FAR1 family protein