 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009116705.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 296aa MW: 33374.7 Da PI: 10.0472 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009116705.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 347.7 | 2.6e-106 | 1 | 296 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye...........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84
mdd g+r+ g+++ + ++ ++ +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al
XP_009116705.1 1 MDDGGHRD--NGWHKashgkwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALAAL 92
88888854..44444455677776431.344444556********************************************************** PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
++++ s++ t+ ++ + ++ q++++++e+re+e++ +p++ ++ +++k++k+ a+k k+++k+kk++e++ k
XP_009116705.1 93 QYRDSSMS------------TSRQHQPHIHHMLQVTENTYETRETETSPPPPTK--PKRGRKAKEPKAA-PANKRGPKTQRKVKKENEDDLTKLM 172
**888733............333333333344789*********9988777754..4555555555532.3333333445566676777777777 PP
GAGA_bind 180 kesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
+++ + sk++++ ++ +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++La
XP_009116705.1 173 FDEEATGSKSDWRGQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRLA 267
7776789******998649**************************************************************************** PP
GAGA_bind 274 aeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
aeG +dlsnpvDLkdhWAkHGtn+++ti+
XP_009116705.1 268 AEGhHDLSNPVDLKDHWAKHGTNRYITIK 296
***88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MDDGGHRDNG WHKASHGKWM MQQHQPQQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA 60
VAERDMAFLQ RDTAIAERNN AIMERDSALA ALQYRDSSMS TSRQHQPHIH HMLQVTENTY 120
ETRETETSPP PPTKPKRGRK AKEPKAAPAN KRGPKTQRKV KKENEDDLTK LMFDEEATGS 180
KSDWRGQETV GLNRVVYDET TMPPPVCSCT GVLRQCYKWG NGGWQSSCCT TTLSMHPLPA 240
LPNKKHARVG GRKMSGSAFS KLLSRLAAEG HHDLSNPVDL KDHWAKHGTN RYITIK
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
