PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116721.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34147.4 Da    PI: 8.7328
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18158212256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  XP_009116721.1 158 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 212
                     788899***********************************************98 PP
2HD-ZIP_I/II122.91.6e-39158247191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_009116721.1 158 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-AL 247
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.5E-351115IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.2E-19138212IPR009057Homeodomain-like
SuperFamilySSF466895.56E-19139215IPR009057Homeodomain-like
PROSITE profilePS5007117.313154214IPR001356Homeobox domain
SMARTSM003892.6E-15156218IPR001356Homeobox domain
PfamPF000464.0E-16158212IPR001356Homeobox domain
CDDcd000863.19E-14158215No hitNo description
PROSITE patternPS000270189212IPR017970Homeobox, conserved site
PfamPF021835.6E-11214248IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-26214257IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGERDDGLGL SLSLSLGLNQ KESSPRLNPM PMASYSSSSH MHMQSHYNHP QKIQNSWIQM  60
FQSSERNSDV GSFLRGLDVN RAPSRVVVDV EEDAGVSSPN STVSSVMSGK RNERELVAAA  120
GTGGGRTIED NEAERGSSSL GGGSDDEDGG GNGDDGSRKK LRLSKEQALV LEETFKEHST  180
LNPKQKMALA KQLNLRTRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCENL TEENRRLQKE  240
VSELRALKLS PQLYMHMKPP TTLTMCPSCE RVAVASSSVA PAPVMSSSSP MGPMSPWAAI  300
PLRQRPAAGS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162SRKKLRL
2206214RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116721.10.0PREDICTED: homeobox-leucine zipper protein HAT3
RefseqXP_013708394.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-176HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A3P5YHF30.0A0A3P5YHF3_BRACM; Uncharacterized protein
TrEMBLM4CTI70.0M4CTI7_BRARP; Uncharacterized protein
STRINGBra007530.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-118homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]