PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116733.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 235aa    MW: 25811.8 Da    PI: 7.4681
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.8e-18160194135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_009116733.1 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 194
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-832235IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.952154190IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-16154204IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15156218No hitNo description
Gene3DG3DSA:3.30.50.109.8E-14157192IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.31E-14159206No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003206.2E-16160194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDVYGLSSPD LLRIDDLLDF SNDEIFSSSS TVASSAASSS ENPFSFHASP PPPPPLLTDF  60
THDLCVPSDD AAHLEWLSRF VDDSFSDYPA NPLTVNVRPD ASFTGKPRSR RSRAPSSPSL  120
AGTWAPMPES ELCYSVAKRS PSKKLEVESV TAEGGGGRRC THCASEKTPQ WRTGPLGPKT  180
LCNACGVRFK SGRLVPEYRP ASSPTFVLTQ HSNSHRKVME LRRQKEQIES RFQPQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116733.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116733.11e-172PREDICTED: GATA transcription factor 4
RefseqXP_013677302.11e-172GATA transcription factor 4-like
SwissprotO497431e-119GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A397YAA71e-171A0A397YAA7_BRACM; GATA transcription factor
TrEMBLM4CTJ81e-171M4CTJ8_BRARP; GATA transcription factor
STRINGBra007542.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-111GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]