PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009116759.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 228aa MW: 26261.2 Da PI: 8.7563

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009116759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.1	3.6e-14	123	175	1	53
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++ + +t++q+++Le+ F+++ +p+ ++r +L+++lgL rq+k+ FqN R+ XP_009116759.1 123 KKRYHHHTAQQIQRLESSFKECLHPDDKQRNQLSRELGLAPRQIKFRFQNIRT 175 5778899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-16	108	174	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-14	108	177	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.973	120	180	IPR001356	Homeobox domain
SMART	SM00389	3.2E-9	121	184	IPR001356	Homeobox domain
CDD	cd00086	1.39E-11	123	177	No hit	No description
Pfam	PF00046	1.2E-11	123	175	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MYYLDCTNGE LCSLCLAHHK DLLTIQSKCV LAIILISFFG WLCYVVRFCL CIDWFWQIGR 60 SLGLYRSISI ACHSSWIHNL TIFYPSSNQR ISTYKKGCLE KVIGGDSGGG SQHHYGTETH 120 RKKKRYHHHT AQQIQRLESS FKECLHPDDK QRNQLSRELG LAPRQIKFRF QNIRTQLNAQ 180 HERADNNALE AEKDKIRCEN IAIREALKHA ICPNCGGPPV NACLFQLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009116759.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ182489	1e-131	DQ182489.1 Brassica napus baby boom interacting protein 1B mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116759.1	1e-171	PREDICTED: homeobox-leucine zipper protein HDG11-like
Refseq	XP_009116760.1	1e-171	PREDICTED: homeobox-leucine zipper protein HDG11-like
TrEMBL	M4CTL8	1e-170	M4CTL8_BRARP; Uncharacterized protein
STRING	Bra007562.1-P	1e-171	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	1e-54	homeodomain GLABROUS 11