PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117017.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 174aa    MW: 20386.5 Da    PI: 9.6037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151153345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    ie    ++  +skR++g+lKKAeE+ vLCd ++ +++fs+t k
  XP_009117017.1 11 IECPKEKSSKYSKRKKGLLKKAEEMAVLCDSDIILLVFSPTSK 53
                    6666677888*****************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.222161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-21281IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-151054IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRKKIELKK IECPKEKSSK YSKRKKGLLK KAEEMAVLCD SDIILLVFSP TSKPNLFYPH  60
SRPLGRILER LSNMSEYERE ERRSYTKKTL MKLFKNKNPN ENHNHSSGRD EVQLQEDDKV  120
IELGEARELL DENTSILRNW QDPHRVDDLA RLTIMEDHLV SILSLIKKVQ IEQG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373042e-98AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117017.11e-124PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLA0A3P5Y6V71e-119A0A3P5Y6V7_BRACM; Uncharacterized protein
STRINGBo8g098790.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.12e-12AGAMOUS-like 33