PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117362.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 197aa    MW: 22694.3 Da    PI: 7.0075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30105163159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYG+K+++g++fpr+Y++C+ ++C vkkk+er++++p++v +tYeg+Hnh+
  XP_009117362.1 105 LDDGYKWRKYGKKPIRGNPFPRHYHKCSNPNCIVKKKIERDTSNPEYVLTTYEGRHNHP 163
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-2698165IPR003657WRKY domain
PROSITE profilePS5081129.195100165IPR003657WRKY domain
SuperFamilySSF1182902.09E-25102165IPR003657WRKY domain
SMARTSM007741.8E-31105164IPR003657WRKY domain
PfamPF031065.0E-22106163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MIYPSNINPN FTDFGETFKF DDYDDDAFQM IMEGISLGDH SPTLSWTSSE KLLATEVTSP  60
LQTSLATSPI SFEIGDKDEK KKRKRHKDDQ VIHVFKTKSV KEIALDDGYK WRKYGKKPIR  120
GNPFPRHYHK CSNPNCIVKK KIERDTSNPE YVLTTYEGRH NHPSPSVVYC DSDDFDLTSL  180
NTLCFQTHNY SYSHSAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-241051661778Probable WRKY transcription factor 4
2lex_A4e-241051661778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931600.0KM593160.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY92) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117362.11e-147PREDICTED: probable WRKY transcription factor 59
SwissprotQ9SJ096e-87WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLA0A078J8R01e-145A0A078J8R0_BRANA; BnaA09g55920D protein
TrEMBLA0A397Y4D81e-145A0A397Y4D8_BRACM; Uncharacterized protein
TrEMBLM4EQZ81e-145M4EQZ8_BRARP; Uncharacterized protein
STRINGBra031221.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.11e-78WRKY DNA-binding protein 59