PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117558.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 191aa    MW: 21464.7 Da    PI: 4.3801
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-191060155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  XP_009117558.1 10 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 60
                    89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-211069IPR016177DNA-binding domain
CDDcd000181.06E-281070No hitNo description
PfamPF008472.4E-121060IPR001471AP2/ERF domain
SMARTSM003808.7E-321174IPR001471AP2/ERF domain
PROSITE profilePS5103221.9571168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-291169IPR001471AP2/ERF domain
PRINTSPR003671.1E-91223IPR001471AP2/ERF domain
PRINTSPR003671.1E-93450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEEEGSSMQS KYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDTPEKAARA FDAALFCLRG  60
SGANFNFPDN PPAISGGGNM SRSEIREAAA RFANSEENVA REKDEEMMQQ ECTTPSAASS  120
SMMMMTMDVD DSEFLSMLPT VGSGNFAADF GLFPGFNDFS DEYSGERFRE ELSPTRDYES  180
YDGSAVHLWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-159681272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.302560.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117558.11e-139PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-92ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A3P5YJ731e-137A0A3P5YJ73_BRACM; Auxin-responsive protein
TrEMBLM4EQJ81e-137M4EQJ8_BRARP; Auxin-responsive protein
STRINGBra031069.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-94ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]