PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009117571.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 270aa MW: 29687.9 Da PI: 8.5044

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009117571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	87	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+++++ + ++ G+g+Wk I+r + k+Rt+ q+ s+ qky XP_009117571.1 87 AWTESEHKRFLLGLQRVGKGDWKGISRDFVKTRTPTQVASHAQKY 131 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.056	80	136	IPR017930	Myb domain
SuperFamily	SSF46689	4.68E-16	82	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-17	83	134	IPR006447	Myb domain, plants
SMART	SM00717	4.4E-8	84	134	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-9	86	131	IPR009057	Homeodomain-like
CDD	cd00167	9.74E-8	87	132	No hit	No description
Pfam	PF00249	2.0E-10	87	131	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MAAVSSSSET GGGAAGKGEI MLFGVRVVVD PMRKCVSLNN LSDYDKSSPE EENEPDAITA 60 AGYASANDAV QITPSTVGNR ERKRGVAWTE SEHKRFLLGL QRVGKGDWKG ISRDFVKTRT 120 PTQVASHAQK YFLRRTNLNR RRRRSSLFDI TTDTVTGMHM EQDHAQENSS LPETNISSGH 180 QVMQVFPTRT EENAPQTFHP NDLSSNRVHP VPVTFQANPA FNLNTDAAPV SLNLSLSFNL 240 NEPSNSRRSA FTMMPSFSDG DSNSNTIRVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009117571.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353076	1e-153	AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009117571.1	0.0	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	4e-56	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	M4EQI9	0.0	M4EQI9_BRARP; Uncharacterized protein
STRING	Bra031060.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-111	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]