PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117657.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 301aa    MW: 33183.8 Da    PI: 9.3729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
   XP_009117657.1  5 KLKWTEEEEEALLAGVQKHGPGKWKNIIKDPEfadslYNRSNIDLKDKWRNL 56
                     689***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.482161IPR017930Myb domain
SuperFamilySSF466891.44E-16260IPR009057Homeodomain-like
SMARTSM007173.2E-10459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-14556IPR009057Homeodomain-like
PfamPF002492.0E-9556IPR001005SANT/Myb domain
CDDcd116605.48E-13757No hitNo description
SMARTSM005265.8E-18125191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.7E-10126201IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-14126205IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.016127203IPR005818Linker histone H1/H5, domain H15
PfamPF005384.3E-10129201IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGNHKLKWTE EEEEALLAGV QKHGPGKWKN IIKDPEFADS LYNRSNIDLK DKWRNLNVPP  60
DIQGSIDKVR TPKIKAAALN LAAVAAAATS TPPPSSATPS PVAPLPRSGS SDLNVDDSWN  120
TMVDAKNAPR YDGMIFEALS ALTDPNGSDV TTIFNFIEEK KHEVPPGFKR VLGSRLRRLA  180
AQGKIEKVNQ IRAGTQNFYR MNGTSFSGVR TPVVARPKEV NVKPRQTNSQ RVLTVSQKEV  240
DQASGTAAFK FAEVEKNLEL VKRAAEHKER MIKLAEQAEI ILLLAEELHE ACCQGNIVEL  300
N
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.256420.0flower
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728591e-163AC172859.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB023K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117657.10.0PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L11e-118TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A397YEJ20.0A0A397YEJ2_BRACM; Uncharacterized protein
STRINGBra030992.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-101MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]