PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009117886.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 279aa MW: 31160.4 Da PI: 10.1951

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009117886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	338.7	1.4e-103	1	279	1	301
GAGA_bind 1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnklla 83 mdddg+ rn+gyyepa +s+k nlglqlm +i +r++k+ r+ nl ++++ ++++++ m++ +++++ +++k+++ XP_009117886.1 1 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHQHhhpephMSY----NWINQ-------HKDKFFN 80 9999..9**99899**********.9**********.999999998888788888888....*.......789 PP GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekk.kkkkrqrakkpkekkakkkkkksekskkk 177 +l+++++ p++ +vl++t+s s+++ +l+ +++++++++p++++++ +++kk k+++++ ++ +k+kk +k+k+++ ++ XP_009117886.1 81 MLPATTT-----PNYGNVLPQTSSSPSMHM----NLH------HHHHQTDEHPVKCEPDIIETKKrKPNSKAGGAATKAKKPRKPKEENG---DS 157 8885.....9***********999....332......23455667788887776655540455556677788888888888432...23 PP GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++++ +r+k kks dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekL XP_009117886.1 158 NNANV--SRVKPAKKSFDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKL 250 33333..689********************************************************************************* PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 a++G++++ p+DLk+hWA+HGtnkfvtir XP_009117886.1 251 ASDGFNFGSPIDLKSHWARHGTNKFVTIR 279 **************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.8E-161	1	279	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.8E-94	1	279	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDDDGFRNWG YYEPAAATSF KGNLGLQLMP TIDRNTKPFL PGRDPNLMIG QTGSYHHQHH 60 HPEPHMSYNW INQHKDKFFN MLPATTTPNY GNVLPQTSSS PSMHMNLHHH HHQTDEHPVK 120 CEPDIIETKK RKPNSKAGGA ATKAKKPRKP KEENGDSNNA NVSRVKPAKK SFDLVINGVN 180 MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ 240 GAFKKVLEKL ASDGFNFGSP IDLKSHWARH GTNKFVTIR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009117886.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009117886.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	1e-161	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	M4EDF3	0.0	M4EDF3_BRARP; Uncharacterized protein
STRING	Bra026813.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-143	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]