PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117890.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 239aa    MW: 27040 Da    PI: 8.8258
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.7e-322477255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prl+WtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR 
  XP_009117890.1 24 PRLKWTPELHQNFVHAVDMLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77
                    8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4232080IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-292078IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-222476IPR006447Myb domain, plants
SuperFamilySSF466893.05E-152477IPR009057Homeodomain-like
PfamPF002495.8E-92576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRCGRSSDG GISGARPYVR SPVPRLKWTP ELHQNFVHAV DMLGGQYKAT PKLVLKIMDV  60
KGLTISHVKS HLQMYRGYKP TLLGRSESSS SSRRRRQDNE DHFYDNLSEH ARNDCLLGFH  120
SFNFRGRTSA DNDDDDFLNN ISMERTKTFA GIGESNKFQS NHFLEVQRTK NIWVNEEEDL  180
TLSLSLDHPH NSQKRWRSNT SSSLSETSEA VSSAFISRDC FASSKIDLNL NLSFSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-192576354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192576354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192576354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192576354Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304861e-137AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117890.11e-178PREDICTED: putative Myb family transcription factor At1g14600
SwissprotQ700D91e-111MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A0D3DXC01e-145A0A0D3DXC0_BRAOL; Uncharacterized protein
STRINGBo8g106700.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.13e-99G2-like family protein