PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118047.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 227aa    MW: 25505.2 Da    PI: 5.1116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172069255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  XP_009118047.1 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDVAARSISG 69
                    799******.**********66.....34**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-272076IPR001471AP2/ERF domain
CDDcd000181.42E-292076No hitNo description
SuperFamilySSF541712.94E-202077IPR016177DNA-binding domain
PfamPF008472.1E-112068IPR001471AP2/ERF domain
PROSITE profilePS5103220.6392077IPR001471AP2/ERF domain
SMARTSM003802.4E-312083IPR001471AP2/ERF domain
PRINTSPR003677.9E-92132IPR001471AP2/ERF domain
PRINTSPR003677.9E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLKSRNMGKS KQEKKSQEVK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAALAY  60
DVAARSISGS LAKTNFFYTD NISLQPQPQQ FLQSSSDKAF FANPVASLEP NMSLGSSSFC  120
FQQENNHFLS SNLTNSFSHC YDDDDHVGKS KEISLPSLPN DMSSSLFSRQ DKTEEDGNAD  180
KMKLGSVLTD EAHCFEYDFL LSGMPLSLLS DYNEDLPQIN GSSSSFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1716831078Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934543e-85AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026843e-85CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K233e-85AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118047.11e-169PREDICTED: ethylene-responsive transcription factor ERF088
SwissprotQ3E7036e-94ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A3P5YM101e-167A0A3P5YM10_BRACM; Uncharacterized protein
STRINGBra026949.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-75ERF family protein