PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118075.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 254aa    MW: 28951 Da    PI: 7.144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-1273125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++++  e+Er RR+++ s f +Lr +lP+      ++K s ++ +++Av+YIk+L+
  XP_009118075.1  73 KKAKRREIERHRRQEVTSLFGNLRYILPSqY---IKGKRSSSDHVQEAVNYIKDLE 125
                     577889***********************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1270145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-770129No hitNo description
PROSITE profilePS5088812.44972124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-1073125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-973143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDFASSSADF AYENELDLSS LMTPSTFIPF QEPNPSIPTI HCAGAENDGR QRIRETTTTD  60
EIITNEDVEP KNKKAKRREI ERHRRQEVTS LFGNLRYILP SQYIKGKRSS SDHVQEAVNY  120
IKDLEKKIKE ISLKRDRIKR SLSHSSSTGE CSIRSLESSY CSCDGDTHIN VKVRTCLVGI  180
ETVASCCFRQ ESCLSSILQL LVQEQCLDVV SCISSRLHPR FIHTIVCEVE KGMEVNFLEL  240
QEKLIKTGKL YHIM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118075.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118075.10.0PREDICTED: transcription factor bHLH55-like
SwissprotQ9LN951e-116BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A0D3DXR11e-164A0A0D3DXR1_BRAOL; Uncharacterized protein
STRINGBo8g108110.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-112bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]