PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118242.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 176aa    MW: 20266.8 Da    PI: 10.4347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-061644230
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                    r++ n rE+ RR r+++ f  L +++ + 
  XP_009118242.1 16 REKRNLREKERRTRMKDLFCLLSSHVSPT 44
                    8899*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9441463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-101480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MERKREIGEG SSLSLREKRN LREKERRTRM KDLFCLLSSH VSPTRRLPVP QLIDEATSYM  60
IKMKENVKYL KEKKKSLLGG EVPGKRSEGS SSLLPKLSIH SRDSIIEMNL IIDVSMKRLM  120
LHELMRVFEE EGAQVMTASL QNLNDRTACT IIAQAVICRI GIDPSRIEKR VRDIIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022571277.11e-124transcription factor bHLH168-like
SwissprotQ9XIJ16e-90BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A078H8R61e-121A0A078H8R6_BRANA; BnaA09g48060D protein
STRINGfgenesh2_kg.1__1131__AT1G10586.12e-89(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-66bHLH family protein