PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009118400.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 182aa MW: 20386.9 Da PI: 9.3705

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009118400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.3	2.2e-15	77	164	12	99
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++++ ++fl d vp++ XP_009118400.1 77 GVEDAKMIRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSGEAYESSVQDKKKFIHYKHLSSVVSNSERYEFLADCVPEK 164 56789999*****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.35E-18	84	163	IPR009072	Histone-fold
Pfam	PF00808	8.3E-22	85	148	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.8E-24	86	163	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MVSSKKPNQE KKPKSDGVNK AGGGNTRSSG SKPKKKNTNV QAIVKKEPEV HEISESSSSD 60 SVEETRRDEP MKSNGGGVED AKMIRFPMNR IRRIMRSDNS APQIMQDAVF LVNKATELFI 120 ERFSGEAYES SVQDKKKFIH YKHLSSVVSN SERYEFLADC VPEKVKAEVA LEEWEKSMTD 180 AG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009118400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC797146	0.0	KC797146.1 Brassica napus transcription factor subunit NF-YC10A (NF-YC10A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118400.1	1e-131	PREDICTED: chromatin accessibility complex protein 1-like
TrEMBL	A0A0A7ANT4	1e-130	A0A0A7ANT4_BRANA; Transcription factor subunit NF-YC10A
TrEMBL	M4ES28	1e-130	M4ES28_BRARP; Uncharacterized protein
STRING	Bra031606.1-P	1e-131	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-70	nuclear factor Y, subunit C10