PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118431.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 668aa    MW: 76688.4 Da    PI: 5.6526
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.52.6e-1072896652373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL+ cA+ +ssgd+     lL ++++++sp gd+ qRla++f++AL+arl++s+ ++ ++   + ++++++ ++ l+++k+f  +sP++++ +
  XP_009118431.1 289 RTLLILCAQSISSGDMITSVDLLRQIRNQSSPLGDASQRLAHFFANALEARLQGSSGGVIQSYyDAVTSKKRTAAQILKSYKTFLSASPFMTLMY 383
                     689***************************************************8887777775788888888********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++Il+a++ ++ +H+iDf+i +G+QWp ++q +++ ++gp +lRiTgv+ p++g   +e+le tg+rL+++++++gvpfe+n++++k++e+
  XP_009118431.1 384 FYSNKMILDAAKDASVLHVIDFGILYGFQWPMFIQRISESKNGPRKLRITGVELPQNGfrPTEKLEDTGRRLREYCKRFGVPFEYNAIASKNWET 478
                     *********************************************************9******************************99***** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++lee++++p+E+laVn vl+ ++l d +   e+ +r+ +Lkl+++++P+vv  +  + + n++ F +rf eal +y+a+fd++ ++l+re+ er
  XP_009118431.1 479 IRLEEFKIRPNEVLAVNAVLRFKNLRDVTPGEEDcPREGFLKLIRDMKPDVVLNSTVNGSFNASFFTTRFKEALFHYTAVFDMFGSTLSRENPER 573
                     **************************9999999889*********************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +  E+++ gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++++ +++ +  +++ +  + + ++e+s+++++gWk+r L+s S+W
  XP_009118431.1 574 MHFEEVFYGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVETELVESFREKMKRWGyHKDFVLDEDSNWFLQGWKGRILYSSSCW 665
                     *************************************************************999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.508262645IPR005202Transcription factor GRAS
PfamPF035149.0E-105289665IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MMESNFYGMV NGYEYYDVSY LPNQTPNLGF GVPSSSDFDL RLDRIQIQPS IWVPSIQQDQ  60
DSPPAAADEI DSENTLLKYV NQLLMEEETL AENQTLSYDS LALRQTEKML QQVITDSQTQ  120
SPYISTSSSN SSGCDCGGEY FNSYSDSCVR FKTRTTNSTK VVSFQGSYML QQPANKIMFS  180
DADSVNQFKR GVEEASKFLP NTDQWIFNQD DKGYTSRVRK HHHQRDQEED EEARMSKQSA  240
PNVDDGKLTE MFDKVLLLDN QLDPQINDNV SSKAPAASKK ERVQAVDFRT LLILCAQSIS  300
SGDMITSVDL LRQIRNQSSP LGDASQRLAH FFANALEARL QGSSGGVIQS YYDAVTSKKR  360
TAAQILKSYK TFLSASPFMT LMYFYSNKMI LDAAKDASVL HVIDFGILYG FQWPMFIQRI  420
SESKNGPRKL RITGVELPQN GFRPTEKLED TGRRLREYCK RFGVPFEYNA IASKNWETIR  480
LEEFKIRPNE VLAVNAVLRF KNLRDVTPGE EDCPREGFLK LIRDMKPDVV LNSTVNGSFN  540
ASFFTTRFKE ALFHYTAVFD MFGSTLSREN PERMHFEEVF YGREVMNVIA CEGVDRVERP  600
ETYKQWQVRM MRAGFKQKPV ETELVESFRE KMKRWGYHKD FVLDEDSNWF LQGWKGRILY  660
SSSCWVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-472926658374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.272110.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118431.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLM4ES030.0M4ES03_BRARP; Uncharacterized protein
STRINGBra031581.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein