PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118432.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 690aa    MW: 78749.6 Da    PI: 6.1908
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.62.5e-1073116872373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL+ cA+ +ssgd+ +a+ lL+++++++sp gd+ qRla +ft+AL+arl++s+  + ++   + ++++++ ++ l+ +k+f  +sP++++ +
  XP_009118432.1 311 RTLLTLCAQSISSGDKLAADDLLNQIKKQCSPLGDASQRLAYFFTKALEARLQGSSGVMIQSYyDSITSKKRTAAQILKTYKAFLSASPFMTLIY 405
                     6799**************************************************55555555427777777779********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++Il+a + ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiTgv+ p++g   +e++e tg+rL+++++++gvpf++n++++k++e+
  XP_009118432.1 406 FFSNKMILDASKDASVLHIIDFGILYGFQWPMFIQYISKSKIGPRKLRITGVELPQNGfrPTEKIEDTGRRLREYCKRFGVPFKYNAIASKNWET 500
                     *********************************************************9******************************99***** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++lee++++p+E+laVn+vl+l++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F++rf eal +ys+lfd++ ++l++e+ er
  XP_009118432.1 501 IRLEEFKIRPNEVLAVNSVLRLKNLRDVTPGEEDcPRDGFLKLIRDMKPDVFLSSTINGSFNAPFFATRFKEALFHYSSLFDMFGSTLSKENPER 595
                     **************************9999999999*********************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +  E e++gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++++ +++ +  +++++  + + ++e+s+++++gWk+r L+s S+W
  XP_009118432.1 596 MHFEGEFFGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVETELVESFREKMKRCGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 687
                     ***************************************************************9999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.984284667IPR005202Transcription factor GRAS
PfamPF035148.8E-105311687IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MMESNFYRIV NGHEYYDVSF LPNQIPDLGF GVPSSSDFDL RLDHHHHHQQ PSYWIPSTQQ  60
DQDSPPGADE IDSENTLLKY VNQLLMEETL SENQSMSYDD ALALRQTEEM LQQVINDSLA  120
QSSNSITSST SSGSSGGGEY LNSNSNSCVR IETEANSTES EALSDNHPHH ILGSNMLSGY  180
GQPANEILVR SMFSDADSVN QFKRGLEEAS KFLPNTDQWI FNPQHEVISV KDEKGFSRVR  240
KHHHQEPEEE EARRSKQSAV NVDDGNITEL FDKVLLLDNQ LDPQIKEETN NVSSKKEGGR  300
GKKKSKAVDF RTLLTLCAQS ISSGDKLAAD DLLNQIKKQC SPLGDASQRL AYFFTKALEA  360
RLQGSSGVMI QSYYDSITSK KRTAAQILKT YKAFLSASPF MTLIYFFSNK MILDASKDAS  420
VLHIIDFGIL YGFQWPMFIQ YISKSKIGPR KLRITGVELP QNGFRPTEKI EDTGRRLREY  480
CKRFGVPFKY NAIASKNWET IRLEEFKIRP NEVLAVNSVL RLKNLRDVTP GEEDCPRDGF  540
LKLIRDMKPD VFLSSTINGS FNAPFFATRF KEALFHYSSL FDMFGSTLSK ENPERMHFEG  600
EFFGREVMNV IACEGVDRVE RPETYKQWQV RMMRAGFKQK PVETELVESF REKMKRCGYH  660
KDFVLDEDSN WFLQGWKGRI LFSSSCWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4331768711374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.272110.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118432.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118432.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLM4ES020.0M4ES02_BRARP; Uncharacterized protein
STRINGBra031580.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein