PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009118547.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 212aa MW: 24202.9 Da PI: 10.0536

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009118547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107.6	1e-33	29	120	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck +r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++++sl++eA +r++dPv G++g +++ +++l+ k+ XP_009118547.1 29 ACASCKRQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRPKLTDSLTWEALWRQKDPVLGSYGEYMRQSEELKLYKS 120 7********************************************************************************99999988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.509	28	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-31	29	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MKERQEGDDM MQRNSNNSNI SNNSPPHQAC ASCKRQRKKC NNECILSPYF PARKTKEFQA 60 VHKVFGVSNV QKMVRTVREE DRPKLTDSLT WEALWRQKDP VLGSYGEYMR QSEELKLYKS 120 LIHNQSLVTW DNNNNQQRVF NNSNNNKNGS ALNSSGSGGF SVVNNNGVGV NREIINGGYT 180 SRNLQGGWGN LKQDQRQQCY AVINGFKHHL PH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-17	30	106	12	88	LOB family transfactor Ramosa2.1
5ly0_B	3e-17	30	106	12	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009118547.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118547.1	1e-158	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9LNB9	1e-105	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	M4EUE8	1e-147	M4EUE8_BRARP; Uncharacterized protein
STRING	Bra032430.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-86	LOB domain-containing protein 2