PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009118548.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 211aa MW: 23988.7 Da PI: 9.9445

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009118548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107.6	9.9e-34	28	119	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck +r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++++sl++eA +r++dPv G++g +++ +++l+ k+ XP_009118548.1 28 ACASCKRQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRPKLTDSLTWEALWRQKDPVLGSYGEYMRQSEELKLYKS 119 7********************************************************************************99999988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.509	27	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-31	28	119	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MTLLEGDDMM QRNSNNSNIS NNSPPHQACA SCKRQRKKCN NECILSPYFP ARKTKEFQAV 60 HKVFGVSNVQ KMVRTVREED RPKLTDSLTW EALWRQKDPV LGSYGEYMRQ SEELKLYKSL 120 IHNQSLVTWD NNNNQQRVFN NSNNNKNGSA LNSSGSGGFS VVNNNGVGVN REIINGGYTS 180 RNLQGGWGNL KQDQRQQCYA VINGFKHHLP H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	29	105	12	88	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	29	105	12	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009118548.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118547.1	1e-154	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9LNB9	1e-105	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	M4EUE8	1e-147	M4EUE8_BRARP; Uncharacterized protein
STRING	Bra032430.1-P	1e-148	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-86	LOB domain-containing protein 2