PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118785.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 221aa    MW: 25092.8 Da    PI: 6.7914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.81.4e-4261323128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +GfrF+Ptdeelv +yL++k +g   ++ ++vi++v+i++++Pw+Lp  ++++++++ wyfF +++++y++g+r++r+tksg+Wk+tgk+ ++++
  XP_009118785.1   6 VGFRFRPTDEELVEHYLRPKNNGGGsTTSSQVINTVNICNLDPWELPplSRMASSDQVWYFFGRKESRYNRGERQKRKTKSGFWKKTGKTLPITR 100
                     8*******************999884445577**************9665999999*************************************** PP

             NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k  ++e++g k++L+fy     +g++++Wvmheyr+
  XP_009118785.1 101 KsgNHETIGEKRVLIFY----TNGSRSNWVMHEYRA 132
                     9877888**********....78999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.0114151IPR003441NAC domain
SuperFamilySSF1019411.57E-445151IPR003441NAC domain
PfamPF023653.8E-266131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGNNMVGFRF RPTDEELVEH YLRPKNNGGG STTSSQVINT VNICNLDPWE LPPLSRMASS  60
DQVWYFFGRK ESRYNRGERQ KRKTKSGFWK KTGKTLPITR KSGNHETIGE KRVLIFYTNG  120
SRSNWVMHEY RASCLSPNDS GAYTICKVQF KGEASEISSS SGVDHVVHTH SLPTPMNNPV  180
GSESPSQFSG NQQEMQFDAE TEMDFEDLLN YDLNSLLDSE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-25713118139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118785.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118785.11e-167PREDICTED: NAC domain-containing protein 5-like isoform X2
SwissprotO819142e-71NAC5_ARATH; NAC domain-containing protein 5
TrEMBLM4EUY21e-163M4EUY2_BRARP; Uncharacterized protein
STRINGBra032615.1-P1e-164(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-72NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]