PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118804.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 191aa    MW: 21352.4 Da    PI: 7.212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-184292155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  XP_009118804.1 42 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPIPEMAAKAYDVAAFCLKG 92
                    68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-124292IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2043102IPR016177DNA-binding domain
PROSITE profilePS5103222.77443100IPR001471AP2/ERF domain
SMARTSM003801.6E-3343106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3043101IPR001471AP2/ERF domain
CDDcd000181.29E-3044101No hitNo description
PRINTSPR003675.8E-124455IPR001471AP2/ERF domain
PRINTSPR003675.8E-1282102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MLQERMKLSP PPLTNNEQPA ADTSVKSCGG GGRETFSATR HPVYHGVRKR RWGKWVSEIR  60
EPRKKSRIWL GSFPIPEMAA KAYDVAAFCL KGRKAQLNFP DEIDDLPRPS TCTARDIQVA  120
AAKAANAVKI IKTGNDVENI RGEGDDFWEG IELPELMMTR CGWSPVPFIA GDDAMCLVDE  180
DSYQYQFMAC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1631104476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531061e-173AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118804.11e-142PREDICTED: ethylene-responsive transcription factor ERF023-like
RefseqXP_013677200.11e-142ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-101ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A397YDN91e-141A0A397YDN9_BRACM; Uncharacterized protein
STRINGBra032630.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-100ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]