PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009118874.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 153aa MW: 17009.1 Da PI: 9.7108

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009118874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	19	41	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C + F ++ +L +H +t H XP_009118874.1 19 ECSLCQRIFFTPQDLITHTNTfH 41 7*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	18	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MNGGFGMRKD LTRVSNPLEC SLCQRIFFTP QDLITHTNTF HSNHHYSNSS SSAGAPAPAT 60 FRNYPNLNRN PNPAFPAMNR SDLNNYRSGP TDEQGRLLKG SAAMTTTRNT NVLFGRQEKP 120 KLMDLVPTMP SEGLRTLPLL SQLEERTPQD TAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009118874.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189246	0.0	AC189246.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
GenBank	AC232437	0.0	AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118874.1	1e-110	PREDICTED: uncharacterized protein LOC103843846
TrEMBL	M4EUM7	1e-108	M4EUM7_BRARP; Uncharacterized protein
STRING	Bra032509.1-P	1e-109	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13551	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04445.1	2e-17	C2H2-like zinc finger protein