PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009118929.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 347aa MW: 38218.9 Da PI: 4.7115

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009118929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	277	317	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_009118929.1 277 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 317 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-14	268	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	272	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.71E-12	276	321	No hit	No description
Pfam	PF00010	1.3E-7	277	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTAGGDQQG LYWSLGSNHS 60 HLSLMPEASS FGFSGESSSY SVADSRYYTV VPPTVEETNN GSLGFGMEDA TVNTNSYLVG 120 EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DYHRSLAGSK KRSRATSTDK 180 NKRSKVGKRG QKGIEMTCDN NNRGEEEEGE KVKRRKSGAM MSRQNSSTTF CSEEESQCPS 240 QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV 300 DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTAGGDQQG LYWSLGSNHS  60
HLSLMPEASS FGFSGESSSY SVADSRYYTV VPPTVEETNN GSLGFGMEDA TVNTNSYLVG  120
EETSECDVEK YSSGKTLLPL ETVVENHDDG ESMLQSETTT DYHRSLAGSK KRSRATSTDK  180
NKRSKVGKRG QKGIEMTCDN NNRGEEEEGE KVKRRKSGAM MSRQNSSTTF CSEEESQCPS  240
QDVGGEEDED ASKALNLNGK TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV  300
DISTMLEEAV HYVKFLQLQI KLLSSDDQWM YAPIAFNGMD IGLNLPR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009118929.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189386	0.0	AC189386.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052L10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118929.1	0.0	PREDICTED: transcription factor bHLH85
Swissprot	Q84WK0	0.0	BH085_ARATH; Transcription factor bHLH85
TrEMBL	M4D4S1	0.0	M4D4S1_BRARP; Uncharacterized protein
STRING	Bra011476.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-170	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]