PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118954.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 598aa    MW: 66925 Da    PI: 9.9904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07496545147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009118954.1 496 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 545
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735491550IPR017930Myb domain
SMARTSM007173.7E-6495548IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9496546IPR009057Homeodomain-like
CDDcd116601.51E-15497547No hitNo description
SuperFamilySSF466892.96E-15497578IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MVLQRRLDHG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS  60
SNNAIGDTNE EDQCAVKTKP HQTVVEEINC DHIHDNDAER RFFVSEILPK THRSPSPPKD  120
FHFGSTSGIT SDSSEKLGTQ GLGQSVCFRS ETNDKISMHG RLINDCEPEL SRDIIAENKH  180
HIGSGFKKPV PPPVCSDDID LLNDDGENFS ARYTTKTFRS TLRIGDRRIK KVLASKYCKL  240
SSKQKETTVT NSDMDLKPSY YNKKHCLKSF RSERRYPIKK RRYFDGYTAS QSEETPKRGS  300
AFMSTIACQK QPALQSRDSH VKLGIKSFKV PELFIEIPET ATVGSLKRTV LEAVTTILEG  360
GLRIGVLVHG KKVRDDSKML LQNGISLDTL SDTLGFCLEP NPPHSTKPLA PEDSDCLRPF  420
NVPHTLTRCL ASQGKHAKPS NSVESDLDSK PSAHNRAKPV YSRALIPVAP PLHAQALNVV  480
PPRKPKRSEV AQRRIRRPFS VAEVEVLVQA VERLGTGRWR DVKLRAFDNA KHRTYVDLKD  540
KWKTLVHTAR ISPQQRRGEP VPQELLDRVL MAHAYWSQQQ GKQQLLEGHQ KLETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-564835854106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118954.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_013691160.10.0telomere repeat-binding protein 5-like isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM4DGG10.0M4DGG1_BRARP; Uncharacterized protein
STRINGBra015585.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2